SGR: Strawberry Genomic Resources
                                                                                                                                           
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  • Home
  • Project description
  • Participating labs
  • Education Activities
  • Bioinf. Workshop
  • Collaborators
  • Publication
  • Genome reannotation
  • RNA-Seq Data Analysis
  • Contacts
  • Item 1a
  • Item 2a
  • Item Folder 3a
    • Sub Item 3.1a
    • Sub Item 3.2a
    • Sub Item 3.3a
    • Sub Item 3.4a
  • Item 4a
  • Item Folder 5a
    • Sub Item 5.1a
    • Item Folder 5.2a
      • Sub Item 5.2.1a
      • Sub Item 5.2.2a
      • Sub Item 5.2.3a
      • Sub Item 5.2.4a
  • Item 6a
  • Samples Info.
  • Differential Expression
    • DEGSeq
    • DESeq
  • Samples Description
  • Gbrowse
  • PO Mapping
  • Search Genes
    • By Gene No.
    • By Gene Desc.
  • Fruit transcriptome analysis
    • Gene Clustering
    • TF Clustering
  • More genomic resources
    • Hormone genes
    • Transcription factors
    • GO assignment
    • Fruit Specific Genes
    • Leaf & Seedling Specific Genes
  • Workshop Info.
  • Parking Directions

The data on this web site are a freely available scientific community resource funded by the National Science Foundation. Please, however, cite the appropriate references (below) when using data or tools from this site for publication. Thank you.

Reference

1) Kang, Darwish, Geretz, Shahan, Alkharouf, and Liu (2013) Genome-Scale Transcriptomic Insights into Early-Stage Fruit Development in Woodland Strawberry Fragaria vesca. Plant Cell; doi:10.1105/tpc.113.111732

2) Darwish, O., Slovin, J. P., Kang, C., Hollender, C. A., Geretz, A., Houston, S., ... & Alkharouf, N. W. (2013). SGR: an online genomic resource for the woodland strawberry. BMC plant biology, 13(1), 223.

3) Hollender C.A., Kang C., Darwish O., Geretz A., Matthews B.F, Slovin J.P., Alkharouf N., Liu Z. (2014) Floral transcriptomes in woodland strawberry uncover developing receptacle and anther gene networks. Plant Physiology 165:1062-1075.

4) Darwish O., Shahan R., Liu Z., Slovin J.P., Alkharouf N. (2015) Re-annotation of the woodland strawberry (Fragaria vesca) genome. BMC Genomics 16:29.

Search Samples              Significance         

Fold Change   

To display a list of all genes that are induced in sample Anther_11 compared to Anther_10 with a fold change greater than or equal 5:
- Select Anther_10_11 from the Sample dropdown menu
- Select Induced from the Significance dropdown menu
- Select >=5 from the Fold Change dropdown menu.
- Hit Search button

 
Differentially Expressed Genes