SGR: Strawberry Genomic Resources
                                                                                                                                           
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  • Home
  • Project description
  • Participating labs
  • Education Activities
  • Bioinf. Workshop
  • Collaborators
  • Publication
  • Genome reannotation
  • RNA-Seq Data Analysis
  • Contacts
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  • Item Folder 3a
    • Sub Item 3.1a
    • Sub Item 3.2a
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    • Sub Item 3.4a
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  • Item Folder 5a
    • Sub Item 5.1a
    • Item Folder 5.2a
      • Sub Item 5.2.1a
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      • Sub Item 5.2.4a
  • Item 6a
  • Samples Info.
  • Differential Expression
    • DEGSeq
    • DESeq
  • Samples Description
  • Gbrowse
  • PO Mapping
  • Search Genes
    • By Gene No.
    • By Gene Desc.
  • Fruit transcriptome analysis
    • Gene Clustering
    • TF Clustering
  • More genomic resources
    • Hormone genes
    • Transcription factors
    • GO assignment
    • Fruit Specific Genes
    • Leaf & Seedling Specific Genes
  • Workshop Info.
  • Parking Directions

The data on this web site are a freely available scientific community resource funded by the National Science Foundation. Please, however, cite the appropriate references (below) when using data or tools from this site for publication. Thank you.

Reference

1) Kang, Darwish, Geretz, Shahan, Alkharouf, and Liu (2013) Genome-Scale Transcriptomic Insights into Early-Stage Fruit Development in Woodland Strawberry Fragaria vesca. Plant Cell; doi:10.1105/tpc.113.111732

2) Darwish, O., Slovin, J. P., Kang, C., Hollender, C. A., Geretz, A., Houston, S., ... & Alkharouf, N. W. (2013). SGR: an online genomic resource for the woodland strawberry. BMC plant biology, 13(1), 223.

3) Hollender C.A., Kang C., Darwish O., Geretz A., Matthews B.F, Slovin J.P., Alkharouf N., Liu Z. (2014) Floral transcriptomes in woodland strawberry uncover developing receptacle and anther gene networks. Plant Physiology 165:1062-1075.

4) Darwish O., Shahan R., Liu Z., Slovin J.P., Alkharouf N. (2015) Re-annotation of the woodland strawberry (Fragaria vesca) genome. BMC Genomics 16:29.

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Gene Information